Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00255.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1653
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29


Found at i:290 original size:24 final size:25

Alignment explanation


    Indices: 255--304  Score: 75
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        245 ATTTTCCCAC

                                     
        255 TTTACAATACATATACATATAGATA
          1 TTTACAATACATATACATATAGATA

                           *     *   
        280 TTTAC-ATACATATAGATATATATA
          1 TTTACAATACATATACATATAGATA

             
        304 T
          1 T

        305 ATATATAATA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  24   18  0.78
  25    5  0.22

ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40


Consensus pattern (25 bp):   
TTTACAATACATATACATATAGATA

Found at i:310 original size:18 final size:18

Alignment explanation


    Indices: 265--316  Score: 70
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        255 TTTACAATAC

                            * 
        265 ATATACATATAGATATTT
          1 ATATACATATAGATATAT

             *                
        283 ACATACATATAGATATAT
          1 ATATACATATAGATATAT

                 *           
        301 ATATATATATA-ATATA
          1 ATATACATATAGATATA

        317 GTGAAAGAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  17    5  0.17
  18   25  0.83

ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40


Consensus pattern (18 bp):   
ATATACATATAGATATAT
Done.