Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01521.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:12 original size:7 final size:7

Alignment explanation


    Indices: 1--31  Score: 62
    Period size: 7  Copynumber: 4.4  Consensus size: 7

                   
          1 CCCCAAA
          1 CCCCAAA

                   
          8 CCCCAAA
          1 CCCCAAA

                   
         15 CCCCAAA
          1 CCCCAAA

                   
         22 CCCCAAA
          1 CCCCAAA

               
         29 CCC
          1 CCC

         32 ATCCTTACAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   24  1.00

ACGTcount: A:0.39, C:0.61, G:0.00, T:0.00


Consensus pattern (7 bp):   
CCCCAAA

Done.