Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01523.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 403

Length: 673
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34


Found at i:166 original size:40 final size:40

Alignment explanation


    Indices: 104--181  Score: 120
    Period size: 40  Copynumber: 1.9  Consensus size: 40

         94 CTCTTTTTCT

                         *  **              *       
        104 GCAAATCTCATTCCTCTTTTTCTCTCTTTCTCTGGCAAAG
          1 GCAAATCTCATTCATCCCTTTCTCTCTTTCTCAGGCAAAG

                                                  
        144 GCAAATCTCATTCATCCCTTTCTCTCTTTCTCAGGCAA
          1 GCAAATCTCATTCATCCCTTTCTCTCTTTCTCAGGCAA

        182 CTCTCATTCC


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  40   34  1.00

ACGTcount: A:0.19, C:0.32, G:0.09, T:0.40


Consensus pattern (40 bp):   
GCAAATCTCATTCATCCCTTTCTCTCTTTCTCAGGCAAAG
Done.