Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01524.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2183
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30


Found at i:2170 original size:19 final size:19

Alignment explanation


    Indices: 2130--2170  Score: 55
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       2120 TTCTTAGATT

                  *       *  * 
       2130 ATTTAAGATTTTGGGTAGA
          1 ATTTAAAATTTTGGATAAA

                               
       2149 ATTTAAAATTTTGGATAAA
          1 ATTTAAAATTTTGGATAAA

               
       2168 ATT
          1 ATT

       2171 ATCCTTTATC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44


Consensus pattern (19 bp):   
ATTTAAAATTTTGGATAAA
Done.