Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01533.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3902
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24


Found at i:123 original size:13 final size:13

Alignment explanation


    Indices: 107--137  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

         97 AGAGGTTTTC

                   *     
        107 AGAAAAAGAAAAA
          1 AGAAAAAAAAAAA

                         
        120 AGAAAAAAAAAAA
          1 AGAAAAAAAAAAA

                 
        133 AGAAA
          1 AGAAA

        138 GAAAGAAATG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (13 bp):   
AGAAAAAAAAAAA
Done.