Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01547.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6179
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:2499 original size:27 final size:27

Alignment explanation


    Indices: 2460--2587  Score: 116
    Period size: 27  Copynumber: 4.7  Consensus size: 27

       2450 ACACGCCCAA

                              *        
       2460 AAAAGGAAACCTTTGTGGTGATCTATG
          1 AAAAGGAAACCTTTGTGGCGATCTATG

                *   *      *  *   *    
       2487 AAAATGAATCCTTTGCGGTGATTTATG
          1 AAAAGGAAACCTTTGTGGCGATCTATG

                *       *    *        * 
       2514 AAAATGAAGA-CGTTGTAGCGATCTAAG
          1 AAAAGGAA-ACCTTTGTGGCGATCTATG

                               *       
       2541 AAAAGGAAACCTTTGTGGCAATCTATG
          1 AAAAGGAAACCTTTGTGGCGATCTATG

                    *            
       2568 -AAAGGAATCCTTTTGTGGCG
          1 AAAAGGAAACC-TTTGTGGCG

       2588 TACTCTAAAG


Statistics
Matches: 80,  Mismatches: 18, Indels: 6
        0.77            0.17        0.06

Matches are distributed among these distances:
  26   10  0.12
  27   70  0.88

ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29


Consensus pattern (27 bp):   
AAAAGGAAACCTTTGTGGCGATCTATG
Done.