Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01555.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40


Found at i:85 original size:19 final size:19

Alignment explanation


    Indices: 63--101  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         53 TTTTTTAATA

                  *   *   *    
         63 TATGAGTTTTTTATTTATT
          1 TATGAGATTTATATATATT

                               
         82 TATGAGATTTATATATATT
          1 TATGAGATTTATATATATT

             
        101 T
          1 T

        102 GAGATATTGG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62


Consensus pattern (19 bp):   
TATGAGATTTATATATATT
Done.