Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01564.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 349

Length: 583
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34


Found at i:45 original size:25 final size:27

Alignment explanation


    Indices: 6--56  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 27

          1 AACCC

                  *                    
          6 TTTGTTTTTTGCTTTT-AAAGAAAACT
          1 TTTGTTCTTTGCTTTTAAAAGAAAACT

                                      
         32 TTTGTTCTTT-CTTTTAAAAGAAAAC
          1 TTTGTTCTTTGCTTTTAAAAGAAAAC

         57 CCTTAATGCC


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  25    5  0.22
  26   18  0.78

ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51


Consensus pattern (27 bp):   
TTTGTTCTTTGCTTTTAAAAGAAAACT

Done.