Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01568.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3912
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37


Found at i:2853 original size:6 final size:6

Alignment explanation


    Indices: 2838--2875  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       2828 ACGTTACTTC

                                                         
       2838 TTTTTG -TTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTT
          1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTT

       2876 AAATGATTTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   5    5  0.16
   6   26  0.84

ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84


Consensus pattern (6 bp):   
TTTTTG

Done.