Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00260.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4187
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30


Found at i:3619 original size:22 final size:22

Alignment explanation


    Indices: 3576--3620  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3566 CGATATATAG

                             *    
       3576 ATATAGATATGAATATGCAAAT
          1 ATATAGATATGAATATGAAAAT

                 *                 
       3598 ATATATATATGGAA-ATGAAAAT
          1 ATATAGATAT-GAATATGAAAAT

             
       3620 A
          1 A

       3621 ACGTGAAAGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  22   17  0.85
  23    3  0.15

ACGTcount: A:0.53, C:0.02, G:0.13, T:0.31


Consensus pattern (22 bp):   
ATATAGATATGAATATGAAAAT
Done.