Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01588.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1867
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27


Found at i:62 original size:3 final size:3

Alignment explanation


    Indices: 54--101  Score: 96
    Period size: 3  Copynumber: 16.0  Consensus size: 3

         44 AACACTTGCA

                                                                           
         54 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
          1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT

        102 TCTTCAACAA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (3 bp):   
CCT

Done.