Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01607.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2831
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25


Found at i:1145 original size:96 final size:96

Alignment explanation


    Indices: 974--1163  Score: 299
    Period size: 96  Copynumber: 2.0  Consensus size: 96

        964 CCCAAACTCT

                                                              *             *
        974 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCTTTCAGAACACAAGT
          1 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC

            *    *        * *              
       1039 TTTATTAATAGCTTTCTTCATCACTCTCTAA
         66 ATTATCAATAGCTTACATCATCACTCTCTAA

                  *                                                       *  
       1070 AAAAATTCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAGGC
          1 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC

                                   *     
       1135 ATTATCAATAGCTTACATCATCATTCTCT
         66 ATTATCAATAGCTTACATCATCACTCTCT

       1164 TCCATTTCAA


Statistics
Matches: 85,  Mismatches: 9, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  96   85  1.00

ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26


Consensus pattern (96 bp):   
AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC
ATTATCAATAGCTTACATCATCACTCTCTAA
Done.