Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00261.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 415

Length: 692
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27


Found at i:523 original size:27 final size:27

Alignment explanation


    Indices: 489--542  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        479 GCTGAGGATA

                                       
        489 TCATGCAGAGTGTCGATTAAGGTTATC
          1 TCATGCAGAGTGTCGATTAAGGTTATC

                                       
        516 TCATGCAGAGTGTCGATTAAGGTTATC
          1 TCATGCAGAGTGTCGATTAAGGTTATC

        543 CCCTTTTTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33


Consensus pattern (27 bp):   
TCATGCAGAGTGTCGATTAAGGTTATC
Done.