Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01649.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2359
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26


Found at i:85 original size:4 final size:4

Alignment explanation


    Indices: 76--122  Score: 94
    Period size: 4  Copynumber: 11.8  Consensus size: 4

         66 TTTGTGGCTT

                                                                      
         76 ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATC
          1 ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATCA ATC

        123 CATTCGACCC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   43  1.00

ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26


Consensus pattern (4 bp):   
ATCA

Done.