Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01658.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27


Found at i:34 original size:13 final size:14

Alignment explanation


    Indices: 11--39  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

          1 AAGTTACAGT

                          
         11 AAGAGAAAAAAGAA
          1 AAGAGAAAAAAGAA

                          
         25 AAGA-AAAAAAGAA
          1 AAGAGAAAAAAGAA

              
         38 AA
          1 AA

         40 CAATGGGTAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (14 bp):   
AAGAGAAAAAAGAA
Done.