Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01661.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 367

Length: 613
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:548 original size:23 final size:24

Alignment explanation


    Indices: 513--557  Score: 56
    Period size: 23  Copynumber: 1.9  Consensus size: 24

        503 GAGAAAGAGA

                             *      
        513 GACAAGAAAAGG-AGAAGGAACAT
          1 GACAAGAAAAGGAAGAAAGAACAT

                  * *             
        536 GACAAGGATAGGAAGAAAGAAC
          1 GACAAGAAAAGGAAGAAAGAAC

        558 TTGCTGATAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  23   10  0.56
  24    8  0.44

ACGTcount: A:0.56, C:0.09, G:0.31, T:0.04


Consensus pattern (24 bp):   
GACAAGAAAAGGAAGAAAGAACAT
Done.