Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01663.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33


Found at i:264 original size:15 final size:16

Alignment explanation


    Indices: 244--273  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        234 AATGGAAAAG

                            
        244 TTACTCTT-CCTTTAC
          1 TTACTCTTACCTTTAC

                           
        259 TTACTCTTACCTTTA
          1 TTACTCTTACCTTTA

        274 TTTCTAACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53


Consensus pattern (16 bp):   
TTACTCTTACCTTTAC

Found at i:938 original size:16 final size:17

Alignment explanation


    Indices: 896--938  Score: 70
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        886 TTCGGGAGTC

                             
        896 GGTTACGCACGAGGAAA
          1 GGTTACGCACGAGGAAA

                            *
        913 GGTTACGCACGAGGAAG
          1 GGTTACGCACGAGGAAA

                      
        930 GGTTA-GCAC
          1 GGTTACGCAC

        939 CCTCGATATG


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  16    4  0.16
  17   21  0.84

ACGTcount: A:0.30, C:0.19, G:0.37, T:0.14


Consensus pattern (17 bp):   
GGTTACGCACGAGGAAA
Done.