Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01671.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2741
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:306 original size:6 final size:6

Alignment explanation


    Indices: 289--318  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        279 CACCACCATC

                    *                         
        289 ATCATG AGCATG ATCATG ATCATG ATCATG
          1 ATCATG ATCATG ATCATG ATCATG ATCATG

        319 GCCATGACCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Consensus pattern (6 bp):   
ATCATG

Found at i:306 original size:12 final size:12

Alignment explanation


    Indices: 289--331  Score: 52
    Period size: 12  Copynumber: 3.6  Consensus size: 12

        279 CACCACCATC

                        
        289 ATCATGAGCATG
          1 ATCATGAGCATG

                   *    
        301 ATCATGATCATG
          1 ATCATGAGCATG

                         
        313 ATCATG-GCCATG
          1 ATCATGAG-CATG

             *     
        325 ACCATGA
          1 ATCATGA

        332 CCATCACCAC


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  12   26  1.00

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26


Consensus pattern (12 bp):   
ATCATGAGCATG

Found at i:324 original size:18 final size:18

Alignment explanation


    Indices: 283--331  Score: 53
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        273 CACGAACACC

                 *            
        283 ACCATCATCATGAGCATG
          1 ACCATGATCATGAGCATG

             *           *    
        301 ATCATGATCATGATCATG
          1 ACCATGATCATGAGCATG

            *      *     
        319 GCCATGACCATGA
          1 ACCATGATCATGA

        332 CCATCACCAC


Statistics
Matches: 25,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24


Consensus pattern (18 bp):   
ACCATGATCATGAGCATG

Found at i:344 original size:3 final size:3

Alignment explanation


    Indices: 331--376  Score: 83
    Period size: 3  Copynumber: 15.3  Consensus size: 3

        321 CATGACCATG

                 *                                                       
        331 ACC ATC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
          1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A

        377 TCATGGTTCT


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.35, C:0.63, G:0.00, T:0.02


Consensus pattern (3 bp):   
ACC

Done.