Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01677.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 476

Length: 794
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:716 original size:4 final size:4

Alignment explanation


    Indices: 709--747  Score: 60
    Period size: 4  Copynumber: 9.8  Consensus size: 4

        699 CTAATATATA

                                             *      *       
        709 TATG TATG TATG TATG TATG TATG TATC TATG CATG TAT
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT

        748 AGATCTTTGT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.26, C:0.05, G:0.21, T:0.49


Consensus pattern (4 bp):   
TATG

Done.