Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00272.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:94 original size:3 final size:3

Alignment explanation


    Indices: 86--116  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

         76 TGCGAAGCTT

                                              *      
         86 ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

        117 AAGTGATCAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32


Consensus pattern (3 bp):   
ATG

Done.