Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01708.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32


Found at i:849 original size:21 final size:21

Alignment explanation


    Indices: 823--890  Score: 136
    Period size: 21  Copynumber: 3.2  Consensus size: 21

        813 TGTTGGCCCT

                                 
        823 TGGCACGAGGGTATGGGGCGA
          1 TGGCACGAGGGTATGGGGCGA

                                 
        844 TGGCACGAGGGTATGGGGCGA
          1 TGGCACGAGGGTATGGGGCGA

                                 
        865 TGGCACGAGGGTATGGGGCGA
          1 TGGCACGAGGGTATGGGGCGA

                 
        886 TGGCA
          1 TGGCA

        891 GACAGTATGG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   47  1.00

ACGTcount: A:0.19, C:0.15, G:0.51, T:0.15


Consensus pattern (21 bp):   
TGGCACGAGGGTATGGGGCGA
Done.