Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01712.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4273
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29


Found at i:62 original size:4 final size:4

Alignment explanation


    Indices: 48--79  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

         38 CCAGCCAGCC

                   *                               
         48 AGCG AGGG AGCG AGCG AGCG AGCG AGCG AGCG
          1 AGCG AGCG AGCG AGCG AGCG AGCG AGCG AGCG

         80 CTAGAGGGTC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   26  1.00

ACGTcount: A:0.25, C:0.22, G:0.53, T:0.00


Consensus pattern (4 bp):   
AGCG

Done.