Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01720.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 945
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24


Found at i:145 original size:78 final size:78

Alignment explanation


    Indices: 23--168  Score: 292
    Period size: 78  Copynumber: 1.9  Consensus size: 78

         13 TTTGTGCAAC

                                                                             
         23 CCAAAGAAAATAAGGACTCAACCCTGGTACAGTCCAAAGAGTCAGACCTGGAGGAGCAACCTCAA
          1 CCAAAGAAAATAAGGACTCAACCCTGGTACAGTCCAAAGAGTCAGACCTGGAGGAGCAACCTCAA

                         
         88 CAAGCGGTGCAGG
         66 CAAGCGGTGCAGG

                                                                             
        101 CCAAAGAAAATAAGGACTCAACCCTGGTACAGTCCAAAGAGTCAGACCTGGAGGAGCAACCTCAA
          1 CCAAAGAAAATAAGGACTCAACCCTGGTACAGTCCAAAGAGTCAGACCTGGAGGAGCAACCTCAA

               
        166 CAA
         66 CAA

        169 TCGGAAGACT


Statistics
Matches: 68,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  78   68  1.00

ACGTcount: A:0.39, C:0.26, G:0.23, T:0.12


Consensus pattern (78 bp):   
CCAAAGAAAATAAGGACTCAACCCTGGTACAGTCCAAAGAGTCAGACCTGGAGGAGCAACCTCAA
CAAGCGGTGCAGG
Done.