Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01726.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2208
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:1428 original size:26 final size:26

Alignment explanation


    Indices: 1399--1456  Score: 62
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1389 AGGAAAAGTA

                        *    **       
       1399 AATAATAGTATATATATGTTAAGTGT
          1 AATAATAGTATAGATATAATAAGTGT

                 * * *                
       1425 AATAAAATTTTAGATATAATAAGTGT
          1 AATAATAGTATAGATATAATAAGTGT

                  
       1451 AATAAT
          1 AATAAT

       1457 TAATGGTTAC


Statistics
Matches: 25,  Mismatches: 7, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40


Consensus pattern (26 bp):   
AATAATAGTATAGATATAATAAGTGT
Done.