Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01758.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2180
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:1561 original size:22 final size:22

Alignment explanation


    Indices: 1533--1577  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1523 TATCTGTCAA

                                  
       1533 AGATAAAGAAGCAGAAATTGAC
          1 AGATAAAGAAGCAGAAATTGAC

                                  
       1555 AGATAAAGAAGCAGAAATTGAC
          1 AGATAAAGAAGCAGAAATTGAC

             
       1577 A
          1 A

       1578 ATCTTGTTGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.56, C:0.09, G:0.22, T:0.13


Consensus pattern (22 bp):   
AGATAAAGAAGCAGAAATTGAC
Done.