Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01761.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:35 original size:6 final size:6

Alignment explanation


    Indices: 24--55  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

         14 GCCTTGAACT

                                                 
         24 TCCCTC TCCCTC TCCCTC TCCCTC TCCCTC TC
          1 TCCCTC TCCCTC TCCCTC TCCCTC TCCCTC TC

         56 TTCTCCCCGC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34


Consensus pattern (6 bp):   
TCCCTC

Found at i:708 original size:6 final size:6

Alignment explanation


    Indices: 697--737  Score: 82
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        687 AACATATTAT

                                                           
        697 AGGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGAA
          1 AGGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGAA

        738 CAGTAGGCAG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (6 bp):   
AGGAAG

Done.