Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01780.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 328
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37


Found at i:76 original size:16 final size:17

Alignment explanation


    Indices: 55--88  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         45 CCCTTTCCTT

                             
         55 TTCTTC-CCACTATTCC
          1 TTCTTCACCACTATTCC

                      *      
         71 TTCTTCACCATTATTCC
          1 TTCTTCACCACTATTCC

             
         88 T
          1 T

         89 GTCACCCTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.15, C:0.38, G:0.00, T:0.47


Consensus pattern (17 bp):   
TTCTTCACCACTATTCC

Done.