Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01784.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1801
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Found at i:42 original size:14 final size:14

Alignment explanation


    Indices: 23--50  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

         13 GCAGAGCCGA

                          
         23 AGGGAGAGGGAGAG
          1 AGGGAGAGGGAGAG

                          
         37 AGGGAGAGGGAGAG
          1 AGGGAGAGGGAGAG

         51 GCAGCGAAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00


Consensus pattern (14 bp):   
AGGGAGAGGGAGAG
Done.