Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01789.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2454
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25


Found at i:211 original size:21 final size:21

Alignment explanation


    Indices: 185--243  Score: 109
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        175 ACTCGAACCA

                      *          
        185 CCAAATTCGCGCCCAAATCTT
          1 CCAAATTCGCACCCAAATCTT

                                 
        206 CCAAATTCGCACCCAAATCTT
          1 CCAAATTCGCACCCAAATCTT

                             
        227 CCAAATTCGCACCCAAA
          1 CCAAATTCGCACCCAAA

        244 CTCAAACCCA


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   37  1.00

ACGTcount: A:0.34, C:0.39, G:0.07, T:0.20


Consensus pattern (21 bp):   
CCAAATTCGCACCCAAATCTT
Done.