Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01797.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2330
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:236 original size:3 final size:3

Alignment explanation


    Indices: 228--262  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        218 TAGAACAGAT

                                                          
        228 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC

        263 GCCCCGACCG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34


Consensus pattern (3 bp):   
TCA

Found at i:2170 original size:2 final size:2

Alignment explanation


    Indices: 2163--2200  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       2153 AAATATCGGG

                                          *        *                
       2163 AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2201 TTTCTTTGAT


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50


Consensus pattern (2 bp):   
AT

Done.