Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01799.N11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1957
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:1633 original size:2 final size:2

Alignment explanation


    Indices: 1626--1659  Score: 50
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1616 GTGTTGCTGC

                                                  *           
       1626 AT AT AT AT AT AT AT AT AT AT AT AGT AG AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A

       1660 GGCATTAATT


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   2   27  0.93
   3    2  0.07

ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44


Consensus pattern (2 bp):   
AT

Found at i:1852 original size:2 final size:2

Alignment explanation


    Indices: 1839--1877  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1829 AGATTCAAAG

                      *                                               
       1839 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1878 TCATATCCAC


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (2 bp):   
TA

Done.