Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01806.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23


Found at i:1081 original size:26 final size:26

Alignment explanation


    Indices: 1048--1097  Score: 91
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1038 TGGTGAGTTG

                      *               
       1048 AAATGTATTGTGTATTGAAAGAATGA
          1 AAATGTATTGAGTATTGAAAGAATGA

                                    
       1074 AAATGTATTGAGTATTGAAAGAAT
          1 AAATGTATTGAGTATTGAAAGAAT

       1098 TCTTTGTATT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   23  1.00

ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34


Consensus pattern (26 bp):   
AAATGTATTGAGTATTGAAAGAATGA
Done.