Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01808.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4741
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33


Found at i:2186 original size:18 final size:19

Alignment explanation


    Indices: 2157--2197  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       2147 AAACTTGAGA

                               
       2157 AAAAAACTTTTTTTCTTCC
          1 AAAAAACTTTTTTTCTTCC

                               
       2176 AAAAAACTTTTTTTCTTCC
          1 AAAAAACTTTTTTTCTTCC

               
       2195 AAA
          1 AAA

       2198 TCTGAGATTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.37, C:0.20, G:0.00, T:0.44


Consensus pattern (19 bp):   
AAAAAACTTTTTTTCTTCC
Done.