Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01822.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39


Found at i:1204 original size:18 final size:19

Alignment explanation


    Indices: 1181--1237  Score: 59
    Period size: 18  Copynumber: 3.2  Consensus size: 19

       1171 ACTGTTTTTA

                               
       1181 TTGTTGTT-TTTTACTATT
          1 TTGTTGTTATTTTACTATT

                          *    
       1199 TTGTTGTTATTTTATTATT
          1 TTGTTGTTATTTTACTATT

                           *    
       1218 ATT-TT-TTA-TTTATTATT
          1 -TTGTTGTTATTTTACTATT

               
       1235 TTG
          1 TTG

       1238 CTACAATTTC


Statistics
Matches: 35,  Mismatches: 1, Indels: 7
        0.81            0.02        0.16

Matches are distributed among these distances:
  16    2  0.06
  17    9  0.26
  18   11  0.31
  19   11  0.31
  20    2  0.06

ACGTcount: A:0.16, C:0.02, G:0.09, T:0.74


Consensus pattern (19 bp):   
TTGTTGTTATTTTACTATT

Found at i:1277 original size:22 final size:22

Alignment explanation


    Indices: 1217--1277  Score: 61
    Period size: 22  Copynumber: 2.8  Consensus size: 22

       1207 ATTTTATTAT

                              *    
       1217 TATT-TTTTATTTATTATTTTGC
          1 TATTATTTTA-TTATTATGTTGC

              **    *             
       1239 TACAATTTCATTATTATGTTGC
          1 TATTATTTTATTATTATGTTGC

                        *    
       1261 TATTATTTTATTCTTAT
          1 TATTATTTTATTATTAT

       1278 TATTTAGATA


Statistics
Matches: 30,  Mismatches: 8, Indels: 2
        0.75            0.20        0.05

Matches are distributed among these distances:
  22   26  0.87
  23    4  0.13

ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64


Consensus pattern (22 bp):   
TATTATTTTATTATTATGTTGC
Done.