Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01823.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2311
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35


Found at i:284 original size:31 final size:31

Alignment explanation


    Indices: 227--286  Score: 84
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        217 AAAATTTCAA

                            **   *         
        227 AATTCAAAAAATATAGGTATTCAAATTGACC
          1 AATTCAAAAAATATAGAAATTAAAATTGACC

                *                        
        258 AATTTAAAAAATATAGAAATTAAAATTGA
          1 AATTCAAAAAATATAGAAATTAAAATTGA

        287 TCAAATTATA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30


Consensus pattern (31 bp):   
AATTCAAAAAATATAGAAATTAAAATTGACC
Done.