Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01864.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 478

Length: 797
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:402 original size:14 final size:16

Alignment explanation


    Indices: 371--403  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        361 CTTGGACTTC

                            
        371 ATTCAGAATATACACT
          1 ATTCAGAATATACACT

                            
        387 ATTCAGAA-AT-CACT
          1 ATTCAGAATATACACT

               
        401 ATT
          1 ATT

        404 TCTATTCTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    7  0.41
  15    2  0.12
  16    8  0.47

ACGTcount: A:0.42, C:0.18, G:0.06, T:0.33


Consensus pattern (16 bp):   
ATTCAGAATATACACT
Done.