Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01866.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4789
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28


Found at i:4338 original size:39 final size:39

Alignment explanation


    Indices: 4281--4476  Score: 279
    Period size: 39  Copynumber: 5.0  Consensus size: 39

       4271 CCTAGGCACC

                         *                   *      
       4281 GTGATTTTCAGGGAAGAGATTCAAGTTCTG-TGGGGGGCA
          1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCT-AGGGGCA

                      *                            
       4320 GTGATTTTCATGGCAGAGATTCAAGTTCTGCTAGGGGCA
          1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA

                           *            *          
       4359 GTGATTTTCAGGGCAAAGATTCAAGTTCAGCTAGGGGCA
          1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA

                                                    
       4398 GTGATTTTCAGGGCAGAGATTCAAGTTCTG-TGAGGGGCA
          1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCT-AGGGGCA

                *  * *                 *           
       4437 GTGACTTCCTGGGCAGAGATTCAAGTTTTGCTAGGGGCA
          1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA

             
       4476 G
          1 G

       4477 GTCCTCATCG


Statistics
Matches: 142,  Mismatches: 12, Indels: 6
        0.89            0.08        0.04

Matches are distributed among these distances:
  38    1  0.01
  39  139  0.98
  40    2  0.01

ACGTcount: A:0.23, C:0.14, G:0.34, T:0.28


Consensus pattern (39 bp):   
GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA

Done.