Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01886.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4041
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:2824 original size:19 final size:19

Alignment explanation


    Indices: 2801--2847  Score: 51
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       2791 ATTTAATCTA

                       *       
       2801 ATTTTTATTATTTA-TTTT
          1 ATTTTTATTATATATTTTT

                  *   *         
       2819 AGTTTTGATTCTATATTTTT
          1 A-TTTTTATTATATATTTTT

                     
       2839 ATTTTTATT
          1 ATTTTTATT

       2848 TTAATATTTA


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  18    1  0.04
  19   17  0.74
  20    5  0.22

ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72


Consensus pattern (19 bp):   
ATTTTTATTATATATTTTT
Done.