Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01889.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3210
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Found at i:653 original size:3 final size:3

Alignment explanation


    Indices: 640--677  Score: 67
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        630 TGAGCTTGAG

                 *                                            
        640 GAA GTA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        678 GCAACTGGTG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03


Consensus pattern (3 bp):   
GAA

Found at i:1218 original size:27 final size:27

Alignment explanation


    Indices: 1180--1235  Score: 103
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1170 TCAATAAAGG

                                       
       1180 TGATGGGAATGATCAATTTTCATGCTA
          1 TGATGGGAATGATCAATTTTCATGCTA

                   *                   
       1207 TGATGGGGATGATCAATTTTCATGCTA
          1 TGATGGGAATGATCAATTTTCATGCTA

              
       1234 TG
          1 TG

       1236 TGTTATAAGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38


Consensus pattern (27 bp):   
TGATGGGAATGATCAATTTTCATGCTA
Done.