Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01889.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2178
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29


Found at i:653 original size:3 final size:3

Alignment explanation


    Indices: 640--677  Score: 67
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        630 TGAGCTTGAG

                 *                                            
        640 GAA GTA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        678 GCAACTGGTG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03


Consensus pattern (3 bp):   
GAA

Done.