Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01895.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3157
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:3061 original size:17 final size:17

Alignment explanation


    Indices: 3020--3053  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       3010 AGATAGCTGC

                             
       3020 AGGTATATGGTCATACT
          1 AGGTATATGGTCATACT

                             
       3037 AGGTATATGGTCATACT
          1 AGGTATATGGTCATACT

       3054 GTGTATATTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35


Consensus pattern (17 bp):   
AGGTATATGGTCATACT
Done.