Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01899.N12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.33


Found at i:1061 original size:24 final size:24

Alignment explanation


    Indices: 1034--1083  Score: 66
    Period size: 23  Copynumber: 2.1  Consensus size: 24

       1024 AAAAGTTGTC

                         *          
       1034 TTTTTAATTAAATTAAA-TTAATT
          1 TTTTTAATTAAATAAAACTTAATT

                     *               
       1057 TTTTTAATTTAATAAAACTTTAATT
          1 TTTTTAATTAAATAAAAC-TTAATT

              
       1082 TT
          1 TT

       1084 AAATAAATTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  23   15  0.65
  25    8  0.35

ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58


Consensus pattern (24 bp):   
TTTTTAATTAAATAAAACTTAATT
Done.