Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01924.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1900
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:456 original size:7 final size:7

Alignment explanation


    Indices: 444--475  Score: 64
    Period size: 7  Copynumber: 4.6  Consensus size: 7

        434 ACTCTTTTTA

                   
        444 TCTCAAC
          1 TCTCAAC

                   
        451 TCTCAAC
          1 TCTCAAC

                   
        458 TCTCAAC
          1 TCTCAAC

                   
        465 TCTCAAC
          1 TCTCAAC

                
        472 TCTC
          1 TCTC

        476 TTCTACTACT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   25  1.00

ACGTcount: A:0.25, C:0.44, G:0.00, T:0.31


Consensus pattern (7 bp):   
TCTCAAC

Done.