Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00329.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36


Found at i:118 original size:53 final size:52

Alignment explanation


    Indices: 38--141  Score: 199
    Period size: 53  Copynumber: 2.0  Consensus size: 52

         28 AATACTAGGC

                                                                 
         38 ATACCTCCACACAAACATTGTATTTGATGCTCTCGTGTACTATCATCCTCGCA
          1 ATACCTCCACACAAACATTGTATTTGATGCTCTCGTGTAC-ATCATCCTCGCA

                                                               
         91 ATACCTCCACACAAACATTGTATTTGATGCTCTCGTGTACATCATCCTCGC
          1 ATACCTCCACACAAACATTGTATTTGATGCTCTCGTGTACATCATCCTCGC

        142 TATATGATTT


Statistics
Matches: 51,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  52   11  0.22
  53   40  0.78

ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32


Consensus pattern (52 bp):   
ATACCTCCACACAAACATTGTATTTGATGCTCTCGTGTACATCATCCTCGCA

Found at i:987 original size:10 final size:10

Alignment explanation


    Indices: 968--997  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

        958 ATTTTACTAT

                      
        968 TATATATATG
          1 TATATATATG

                 *    
        978 TATATGTATG
          1 TATATATATG

                      
        988 TATATATATG
          1 TATATATATG

        998 CTTCAGTTTC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50


Consensus pattern (10 bp):   
TATATATATG
Done.