Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01938.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3652
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:3520 original size:1 final size:1

Alignment explanation


    Indices: 3514--3558  Score: 54
    Period size: 1  Copynumber: 45.0  Consensus size: 1

       3504 CATACATGCA

                      *   *   *    *                     
       3514 TTTTTTTTTTATTTCTTTCTTTTGTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       3559 GGGTTGGGGG


Statistics
Matches: 36,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   1   36  1.00

ACGTcount: A:0.02, C:0.04, G:0.02, T:0.91


Consensus pattern (1 bp):   
T

Found at i:3544 original size:22 final size:22

Alignment explanation


    Indices: 3516--3559  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3506 TACATGCATT

                                  
       3516 TTTTTTTTATTTCTTTCTTTTG
          1 TTTTTTTTATTTCTTTCTTTTG

                    *   *   *     
       3538 TTTTTTTTTTTTTTTTTTTTTG
          1 TTTTTTTTATTTCTTTCTTTTG

       3560 GGTTGGGGGA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.02, C:0.05, G:0.05, T:0.89


Consensus pattern (22 bp):   
TTTTTTTTATTTCTTTCTTTTG
Done.