Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00300.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28


Found at i:1380 original size:15 final size:16

Alignment explanation


    Indices: 1355--1388  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       1345 AAAATCTAAC

                            
       1355 ATTTTTATTGTAAATA
          1 ATTTTTATTGTAAATA

                       *    
       1371 ATTTTT-TTGTCAATA
          1 ATTTTTATTGTAAATA

               
       1386 ATT
          1 ATT

       1389 CGTGGTCTAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   11  0.65
  16    6  0.35

ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59


Consensus pattern (16 bp):   
ATTTTTATTGTAAATA
Done.