Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01941.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35


Found at i:1517 original size:16 final size:16

Alignment explanation


    Indices: 1466--1517  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1456 CGGGTTTAGA

                            
       1466 TTTATACTTCTGATGT
          1 TTTATACTTCTGATGT

                *    *  *   *
       1482 TTTAAAC-TGTGTTAGA
          1 TTTATACTTCTGAT-GT

                            
       1498 TTTATACTTCTGATGT
          1 TTTATACTTCTGATGT

                
       1514 TTTA
          1 TTTA

       1518 ACATGCCGTT


Statistics
Matches: 26,  Mismatches: 8, Indels: 4
        0.68            0.21        0.11

Matches are distributed among these distances:
  15    4  0.15
  16   18  0.69
  17    4  0.15

ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54


Consensus pattern (16 bp):   
TTTATACTTCTGATGT
Done.