Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01941.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3199
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:1512 original size:16 final size:16

Alignment explanation


    Indices: 1461--1512  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1451 CGGGTTTAGA

                            
       1461 TTTATACTTCTGATGT
          1 TTTATACTTCTGATGT

                *    *  *   *
       1477 TTTAAAC-TGTGTTAGA
          1 TTTATACTTCTGAT-GT

                            
       1493 TTTATACTTCTGATGT
          1 TTTATACTTCTGATGT

                
       1509 TTTA
          1 TTTA

       1513 ACATGCCGTT


Statistics
Matches: 26,  Mismatches: 8, Indels: 4
        0.68            0.21        0.11

Matches are distributed among these distances:
  15    4  0.15
  16   18  0.69
  17    4  0.15

ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54


Consensus pattern (16 bp):   
TTTATACTTCTGATGT

Found at i:1650 original size:204 final size:203

Alignment explanation


    Indices: 1300--1706  Score: 787
    Period size: 204  Copynumber: 2.0  Consensus size: 203

       1290 CACTTGCTTA

                                                                             
       1300 GATGTTTTAACATGCCGTTGCTGCTGACATTATAGGGCAATATATCATTTACCATATCTATGAAC
          1 GATGTTTTAACATGCCGTTGCTGCTGACATTATAGGGCAATATATCATTTACCATATCTATGAAC

                                       *                                     
       1365 TGATTCTTTACCCGCAAAATTTTAATGTGAGGTTGTGTTATGTACCATATATCTAGATATGGTTG
         66 TGATTCTTTACCCGCAAAATTTTAATGCGAGGTTGTGTTATGTACCATATATCTAGATATGGTTG

                                                                             
       1430 GCTGAAGGCAGAGTTGCTTGTCGGGTTTAGATTTATACTTCTGATGTTTTAAACTGTGTTAGATT
        131 GCTGAAGGCAGAGTTGCTTGTCGGGTTTAGATTTATACTTCTGATGTTTTAAACTGTGTTAGATT

                     
       1495 TATACTTCT
        196 TATA-TTCT

                                                                             
       1504 GATGTTTTAACATGCCGTTGCTGCTGACATTATAGGGCAATATATCATTTACCATATCTATGAAC
          1 GATGTTTTAACATGCCGTTGCTGCTGACATTATAGGGCAATATATCATTTACCATATCTATGAAC

                                                        *                    
       1569 TGATTCTTTACCCGCAAAATTTTAATGCGAGGTTGTGTTATGTATCATATATCTAGATATGGTTG
         66 TGATTCTTTACCCGCAAAATTTTAATGCGAGGTTGTGTTATGTACCATATATCTAGATATGGTTG

                                                                             
       1634 GCTGAAGGCAGAGTTGCTTGTCGGGTTTAGATTTATACTTCTGATGTTTTAAACTGTGTTAGATT
        131 GCTGAAGGCAGAGTTGCTTGTCGGGTTTAGATTTATACTTCTGATGTTTTAAACTGTGTTAGATT

                    
       1699 TATATTCT
        196 TATATTCT

       1707 AACTATTTAT


Statistics
Matches: 201,  Mismatches: 2, Indels: 1
        0.99            0.01        0.00

Matches are distributed among these distances:
 203    4  0.02
 204  197  0.98

ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40


Consensus pattern (203 bp):   
GATGTTTTAACATGCCGTTGCTGCTGACATTATAGGGCAATATATCATTTACCATATCTATGAAC
TGATTCTTTACCCGCAAAATTTTAATGCGAGGTTGTGTTATGTACCATATATCTAGATATGGTTG
GCTGAAGGCAGAGTTGCTTGTCGGGTTTAGATTTATACTTCTGATGTTTTAAACTGTGTTAGATT
TATATTCT
Done.