Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01952.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3831
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:3211 original size:6 final size:6

Alignment explanation


    Indices: 3202--3227  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       3192 AATGCAAGCG

                                          
       3202 AGAGAC AGAGAC AGAGAC AGAGAC AG
          1 AGAGAC AGAGAC AGAGAC AGAGAC AG

       3228 GGTGATGCAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.50, C:0.15, G:0.35, T:0.00


Consensus pattern (6 bp):   
AGAGAC

Done.