Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g01957.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 470
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33


Found at i:381 original size:16 final size:16

Alignment explanation


    Indices: 360--414  Score: 74
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        350 GTTTGGTTCA

                          * 
        360 TTGTAATGGAATAGGG
          1 TTGTAATGGAATAGAG

                   *        
        376 TTGTAATTGAATAGAG
          1 TTGTAATGGAATAGAG

            *               
        392 CTGTAATGGAATAGAG
          1 TTGTAATGGAATAGAG

            *      
        408 CTGTAAT
          1 TTGTAAT

        415 CAGTAATTCA


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  16   35  1.00

ACGTcount: A:0.35, C:0.04, G:0.29, T:0.33


Consensus pattern (16 bp):   
TTGTAATGGAATAGAG
Done.